Fred Baxter played college football as a tight end for the Auburn Tigers from 1990 to 1992, earning a reputation for his size, versatility, and strong blocking ability. His breakout season came in 1991 when he led Auburn tight ends with 28 receptions for nearly 400 yards while playing under legendary head coach Pat Dye. In 1992, despite Auburn's run-heavy offense, Baxter remained a reliable target and averaged a career-high 13.8 yards per catch.
His performance at Auburn led to his selection by the New York Jets in the fifth round (115th overall) of the 1993 NFL Draft. Baxter went on to play 11 seasons in the NFL (1993–2003), highlighted by an eight-year tenure with the Jets where he became known as an outstanding blocker and special teams contributor. He later won Super Bowl XXXVIII with the New England Patriots.
Off the field, Baxter earned a Bachelor of Science in Education from Auburn, a foundation he later used in coaching.